Package: KinMixLite 2.1.1
KinMixLite: Inference About Relationships from DNA Mixtures
Methods for inference about relationships between contributors to a DNA mixture and other individuals of known genotype: a basic example would be testing whether a contributor to a mixture is the father of a child of known genotype. This provides most of the functionality of the 'KinMix' package, but with some loss of efficiency and restriction on problem size, as the latter uses 'RHugin' as the Bayes net engine, while this package uses 'gRain'. The package implements the methods introduced in Green, P. J. and Mortera, J. (2017) <doi:10.1016/j.fsigen.2017.02.001> and Green, P. J. and Mortera, J. (2021) <doi:10.1111/rssc.12498>.
Authors:
KinMixLite_2.1.1.tar.gz
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KinMixLite_2.1.1.tgz(r-4.4-any)KinMixLite_2.1.1.tgz(r-4.3-any)
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KinMixLite.pdf |KinMixLite.html✨
KinMixLite/json (API)
# Install 'KinMixLite' in R: |
install.packages('KinMixLite', repos = c('https://petergreen5678.r-universe.dev', 'https://cloud.r-project.org')) |
- Cgt - Small data set for demonstrating some capabilities of KinMix and KinMixLite
- Fgt - Small data set for demonstrating some capabilities of KinMix and KinMixLite
- Mgt - Small data set for demonstrating some capabilities of KinMix and KinMixLite
- Rgt - Small data set for demonstrating some capabilities of KinMix and KinMixLite
- S1gt - Small data set for demonstrating some capabilities of KinMix and KinMixLite
- S2gt - Small data set for demonstrating some capabilities of KinMix and KinMixLite
- db - Small data set for demonstrating some capabilities of KinMix and KinMixLite
- emperors - IBD pattern distribution in the Iulius-Claudius pedigree
- epg - Small data set for demonstrating some capabilities of KinMix and KinMixLite
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 28 days agofrom:a05e07e1dc. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 10 2024 |
R-4.5-win | OK | Oct 10 2024 |
R-4.5-linux | OK | Oct 10 2024 |
R-4.4-win | OK | Oct 10 2024 |
R-4.4-mac | OK | Oct 10 2024 |
R-4.3-win | OK | Oct 10 2024 |
R-4.3-mac | OK | Oct 10 2024 |
Exports:add.child.meiosis.nodesadd.motherchild.likd.nodeadd.relative.likd.nodeas.gtas.IBDcheckpeaksconvertIBDdelete.DQnodesexpr.make.findingsgt2acaintoMixlogL.UKXlogLXloop.rpt.IBDmake.profilemixMLXpedigreeIBDplot.IBDprotectedprotected.mixMLreplace.tables.for.UAFreplace.Ui.tablesrequire.compiledrGTsrnirpt.AMELrpt.IBDrpt.typed.childrpt.typed.parentsrpt.typed.relativerpt.typed.relativesrpt.UAFsizewlr
Dependencies:backportsbroomclicodacpp11DNAmixturesLitedplyrevaluatefansigenericsgluegRaingRavengRbasehighrigraphkinship2knitrlatticelifecyclemagrittrMatrixnumDerivpedmutpedtoolspillarpkgconfigpurrrquadprogR6RcppRcppArmadilloRcppEigenribdrlangRsolnpslamstatnet.commonstringistringrtibbletidyrtidyselecttruncnormutf8vctrswithrxfunyaml