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  "Title": "Inference About Relationships from DNA Mixtures",
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  "Maintainer": "Peter Green <P.J.Green@bristol.ac.uk>",
  "Description": "Methods for inference about/under complex relationships\nusing peak height data from DNA mixtures: the most basic\nexample would be testing whether a contributor to a mixture is\nthe father of a child of known genotype. This provides most of\nthe functionality of the 'KinMix' package, but with some loss\nof efficiency and restriction on problem size, as the latter\nuses 'RHugin' as the Bayes net engine, while this package uses\n'gRain'. The package implements the methods introduced in\nGreen, P. J. and Mortera, J. (2017)\n<doi:10.1016/j.fsigen.2017.02.001> and Green, P. J. and\nMortera, J. (2021) <doi:10.1111/rssc.12498>.",
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    {
      "page": "KinMixLite-package",
      "title": "Inference About Relationships from DNA Mixtures",
      "topics": [
        "KinMixLite-package",
        "KinMixLite"
      ]
    },
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      "page": "add.child.meiosis.nodes",
      "title": "Replace CPTs for mixture contributor a Father, given Child genotype, by MBN method",
      "topics": [
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      ]
    },
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      "page": "add.motherchild.likd.node",
      "title": "Replace CPTs for mixture contributor a Father, given Child and Mother genotypes, by ALN method",
      "topics": [
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      ]
    },
    {
      "page": "add.relative.likd.node",
      "title": "Replace CPTs for mixture contributor a Father, given Child genotype, by ALN method",
      "topics": [
        "add.relative.likd.node"
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    },
    {
      "page": "as.gt",
      "title": "Extract genotype profile for a single contributor from rGTs output",
      "topics": [
        "as.gt"
      ]
    },
    {
      "page": "checkdata",
      "title": "Check data for absences of markers or allele values",
      "topics": [
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    {
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      "title": "Check and modify database to have positive frequencies for all observed peaks/alleles",
      "topics": [
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    {
      "page": "convertIBD",
      "title": "Convert relationship information to IBD pattern distribution",
      "topics": [
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        "convertIBD"
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    {
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    {
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      "title": "Coding additional findings as expression",
      "topics": [
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      "topics": [
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      "title": "Log likelihood for mixture model, by marker",
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      "topics": [
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    {
      "page": "loop.rpt.IBD",
      "title": "Analysis of DNA mixtures with familial relationships by looping",
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      "topics": [
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        "make.profiles"
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    {
      "page": "mixMLX",
      "title": "Maximises mixture likelihood when extra findings present",
      "topics": [
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    {
      "page": "pedigreeIBD",
      "title": "Construct IBD pattern distribution from pedigree",
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      "title": "Plot IBD patterns and pattern distributions",
      "topics": [
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      "title": "Catch numerical errors, and return -Inf",
      "topics": [
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      "page": "rGTs",
      "title": "Simulate random genotype profiles and DNA samples for related individuals",
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